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Data summary preparation

Source: R/summarizor.R
summarizor.Rd

It performs a univariate statistical analysis of a dataset by group and formats the results so that they can be used with the tabulator() function or directly with as_flextable. summarizor illustration

Usage

summarizor(
  x,
  by = character(),
  overall_label = NULL,
  num_stats = c("mean_sd", "median_iqr", "range"),
  hide_null_na = TRUE
)

Arguments

x

dataset

by

columns names to be used as grouping columns

overall_label

label to use as overall label

num_stats

available statistics for numerical columns to show, available options are "mean_sd", "median_iqr" and "range".

hide_null_na

if TRUE (default), NA counts will not be shown when 0.

Note

This is very first version of the function; be aware it can evolve or change.

See also

fmt_summarizor(), labelizor()

Examples

# \dontshow{
data.table::setDTthreads(1)
# }
z <- summarizor(CO2[-c(1, 4)],
                by = "Treatment",
                overall_label = "Overall"
)
ft_1 <- as_flextable(z)
ft_1

nonchilled
(N=40)
chilled
(N=42)
Overall
(N=82)
Plant
Qn1
5 (12.50%)
0 (0.00%)
5 (6.10%)
Qn2
7 (17.50%)
0 (0.00%)
7 (8.54%)
Qn3
7 (17.50%)
0 (0.00%)
7 (8.54%)
Qc1
0 (0.00%)
7 (16.67%)
7 (8.54%)
Qc3
0 (0.00%)
7 (16.67%)
7 (8.54%)
Qc2
0 (0.00%)
7 (16.67%)
7 (8.54%)
Mn3
7 (17.50%)
0 (0.00%)
7 (8.54%)
Mn2
7 (17.50%)
0 (0.00%)
7 (8.54%)
Mn1
7 (17.50%)
0 (0.00%)
7 (8.54%)
Mc2
0 (0.00%)
7 (16.67%)
7 (8.54%)
Mc3
0 (0.00%)
7 (16.67%)
7 (8.54%)
Mc1
0 (0.00%)
7 (16.67%)
7 (8.54%)
Type
Quebec
19 (47.50%)
21 (50.00%)
40 (48.78%)
Mississippi
21 (52.50%)
21 (50.00%)
42 (51.22%)
conc
Mean (SD)
445.6 (299.9)
435.0 (297.7)
440.2 (297.0)
Median (IQR)
350.0 (500.0)
350.0 (500.0)
350.0 (500.0)
Range
95.0 - 1000.0
95.0 - 1000.0
95.0 - 1000.0
uptake
Mean (SD)
30.8 (9.6)
23.8 (10.9)
27.2 (10.8)
Median (IQR)
31.3 (12.3)
19.7 (20.4)
28.3 (18.8)
Range
10.6 - 45.5
7.7 - 42.4
7.7 - 45.5

ft_2 <- as_flextable(z, sep_w = 0, spread_first_col=TRUE)
ft_2

nonchilled
(N=40)
chilled
(N=42)
Overall
(N=82)
Plant
Qn1
5 (12.50%)
0 (0.00%)
5 (6.10%)
Qn2
7 (17.50%)
0 (0.00%)
7 (8.54%)
Qn3
7 (17.50%)
0 (0.00%)
7 (8.54%)
Qc1
0 (0.00%)
7 (16.67%)
7 (8.54%)
Qc3
0 (0.00%)
7 (16.67%)
7 (8.54%)
Qc2
0 (0.00%)
7 (16.67%)
7 (8.54%)
Mn3
7 (17.50%)
0 (0.00%)
7 (8.54%)
Mn2
7 (17.50%)
0 (0.00%)
7 (8.54%)
Mn1
7 (17.50%)
0 (0.00%)
7 (8.54%)
Mc2
0 (0.00%)
7 (16.67%)
7 (8.54%)
Mc3
0 (0.00%)
7 (16.67%)
7 (8.54%)
Mc1
0 (0.00%)
7 (16.67%)
7 (8.54%)
Type
Quebec
19 (47.50%)
21 (50.00%)
40 (48.78%)
Mississippi
21 (52.50%)
21 (50.00%)
42 (51.22%)
conc
Mean (SD)
445.6 (299.9)
435.0 (297.7)
440.2 (297.0)
Median (IQR)
350.0 (500.0)
350.0 (500.0)
350.0 (500.0)
Range
95.0 - 1000.0
95.0 - 1000.0
95.0 - 1000.0
uptake
Mean (SD)
30.8 (9.6)
23.8 (10.9)
27.2 (10.8)
Median (IQR)
31.3 (12.3)
19.7 (20.4)
28.3 (18.8)
Range
10.6 - 45.5
7.7 - 42.4
7.7 - 45.5

z <- summarizor(CO2[-c(1, 4)])
ft_3 <- as_flextable(z, sep_w = 0, spread_first_col=TRUE)
ft_3

Statistic
(N=82)
Plant
Qn1
5 (6.10%)
Qn2
7 (8.54%)
Qn3
7 (8.54%)
Qc1
7 (8.54%)
Qc3
7 (8.54%)
Qc2
7 (8.54%)
Mn3
7 (8.54%)
Mn2
7 (8.54%)
Mn1
7 (8.54%)
Mc2
7 (8.54%)
Mc3
7 (8.54%)
Mc1
7 (8.54%)
Type
Quebec
40 (48.78%)
Mississippi
42 (51.22%)
Treatment
nonchilled
40 (48.78%)
chilled
42 (51.22%)
conc
Mean (SD)
440.2 (297.0)
Median (IQR)
350.0 (500.0)
Range
95.0 - 1000.0
uptake
Mean (SD)
27.2 (10.8)
Median (IQR)
28.3 (18.8)
Range
7.7 - 45.5